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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136721550_136731463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
136721550 - 136731463
Intron Length:
9914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCTAT
U12 Branch Point Sequence:
ATATATCTATTT
Flanking Amino Acid:
MPKPINVRVTTMDA
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
66
0.4
1.3
64.8
42.4
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
45.2
-0.2
2
64.93
39.6

Associated Gene:

Gene:
RDX
Ensembl Gene ID:
ENSAPLG00000002864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042612
136698692 - 136731535
32844
ENSAPLT00000040628
136697159 - 136731535
34377
ENSAPLT00000020220
136684060 - 136731535
47476
ENSAPLT00000002962
136692642 - 136731475
38834
ENSAPLT00000048428
136687631 - 136731535
43905