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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136764766_136766118_F

Intron Information:

Intron Rank:
150464
Intron Class:
major
Intron Phase:
Intron Coordinates:
136764766 - 136766118
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TAAATATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.6
0.62
0.8
73.9
29.6
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
49.8
0.06
1.7
69.33
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043983
136764501 - 136767147
2647