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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136764766_136768705_F

Intron Information:

Intron Rank:
150463
Intron Class:
major
Intron Phase:
Intron Coordinates:
136764766 - 136768705
Intron Length:
3940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
AACAGCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
45.9
-0.2
2
59.84
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030875
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031263
136764501 - 136769326
4826