About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136772194_136776857_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136772194 - 136776857
Intron Length:
4664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
GTTTTATTACAT
Flanking Amino Acid:
PFGLSARAALSSEDKITVHF
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
50.9
0.11
2
74.95
41.3

Associated Gene:

Gene:
FDX1
Ensembl Gene ID:
ENSAPLG00000024650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045862
136772021 - 136786668
14648