About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136776983_136780586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136776983 - 136780586
Intron Length:
3604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TTTCTGTTACCT
Flanking Amino Acid:
IENNLDIDGFGACEGTLACS
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
86.2
0.82
0.8
84.7
30.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
52.7
0.16
2.3
80.65
41.4

Associated Gene:

Gene:
FDX1
Ensembl Gene ID:
ENSAPLG00000024650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045862
136772021 - 136786668
14648