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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136816139_136817110_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136816139 - 136817110
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTA
5'SS Class:
major
3'SS Sequence:
TATATGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGAAGAATT
Flanking Amino Acid:
NNEEKIKSIQRLIEQLPRAN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69
38.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
78.1
0.63
0.9
73.9
41.2
Minor 5ss
38.3
-1.3
3.7
54.8
49.4
Minor BPS
44.1
-0.3
2.2
69.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003858
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003944
136811370 - 136818710
7341