Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136817221_136818551_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

136817221 - 136818551

Intron Length:

1331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGGATAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTTCTCTGGATA

Flanking Amino Acid:

SIFVTASLFKDFLRNIPGSI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

77.8

32.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

58.1

0.18

1.2

64.5

40.5

Minor 5ss

30.9

-2.2

3.3

46.1

Minor BPS

59.7

0.3

1.4

72.07

33.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003944

136811370 - 136818710

7341