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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13691338_13701778_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13691338 - 13701778
Intron Length:
10441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAG
U12 Branch Point Sequence:
TCTCCCTTACCC
Flanking Amino Acid:
GKGDLEEYGQELWSVKRDFV
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
48.7
-0
1.6
61.7
41.5
Major PPT
74.6
0.55
1
72.4
38.1
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
68.2
0.55
1.6
75.89
40.7

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006405
13691236 - 13727290
36055