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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136924809_136929285_F

Intron Information:

Intron Rank:
136036
Intron Class:
major
Intron Phase:
Intron Coordinates:
136924809 - 136929285
Intron Length:
4477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.8
76.6
36.6
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
58.6
0.27
1.9
74.53
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018463
136922796 - 136929555
6760