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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136977420_136995471_F

Intron Information:

Intron Rank:
140692
Intron Class:
major
Intron Phase:
Intron Coordinates:
136977420 - 136995471
Intron Length:
18052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTCTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CTCTTTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
58.7
0.22
1.2
67
38
Major PPT
82.4
0.73
0.7
79.1
26.6
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
50.9
0.02
1.7
61.33
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025739
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042590
136977275 - 136995650
18376