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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136977420_137000784_F

Intron Information:

Intron Rank:
140690
Intron Class:
major
Intron Phase:
Intron Coordinates:
136977420 - 137000784
Intron Length:
23365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
ACTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCCTCACAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
43
-0.4
2.2
62.91
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025739
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039041
136977275 - 137003705
26431