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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_136977420_137003671_F

Intron Information:

Intron Rank:
140693
Intron Class:
major
Intron Phase:
Intron Coordinates:
136977420 - 137003671
Intron Length:
26252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TATTAACTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
68.8
0.42
0.9
59.8
41.2
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
74.1
0.83
1.5
88.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025739
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044308
136977275 - 137003705
26431