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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13701914_13702048_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13701914 - 13702048
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
CCTTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTCCTTTCATT
Flanking Amino Acid:
CSYVVTNGLGVNVFKDPVAD
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.8
0.67
0.8
77.9
29.3
Minor 5ss
44.4
-0.6
2.8
53.5
43.8
Minor BPS
60.3
0.41
1.7
77.88
38.9

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043623
13695672 - 13727290
31619
ENSAPLT00000034335
13700549 - 13727290
26742
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055