About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13702190_13707848_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13702190 - 13707848
Intron Length:
5659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
DGVDINTLQEIVEGMKKNKW
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.8
83.2
32.1
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043623
13695672 - 13727290
31619