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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137024977_137025674_F

Intron Information:

Intron Rank:
145651
Intron Class:
major
Intron Phase:
Intron Coordinates:
137024977 - 137025674
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
1
75.9
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78
0.63
1
79.7
32.5
Minor 5ss
30.8
-2.2
3.7
41.3
45.3
Minor BPS
58.6
0.35
1.7
74.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033487
137024898 - 137034291
9394
ENSAPLT00000024205
137024898 - 137032035
7138