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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137027384_137028693_F

Intron Information:

Intron Rank:
145654
Intron Class:
major
Intron Phase:
Intron Coordinates:
137027384 - 137028693
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
41.4
-1
3.1
56.1
48
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033487
137024898 - 137034291
9394
ENSAPLT00000024205
137024898 - 137032035
7138