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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137028794_137031780_F

Intron Information:

Intron Rank:
145655
Intron Class:
major
Intron Phase:
Intron Coordinates:
137028794 - 137031780
Intron Length:
2987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTTAA
5'SS Class:
major
3'SS Sequence:
TTTCATTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCCAATCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
67.8
35.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81
0.7
0.8
73.4
36.8
Minor 5ss
33.5
-1.9
3
40
46
Minor BPS
48.7
-0
2
72.5
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033487
137024898 - 137034291
9394
ENSAPLT00000024205
137024898 - 137032035
7138