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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137058508_137058668_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137058508 - 137058668
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGATA
5'SS Class:
major
3'SS Sequence:
TCCACGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTGAGTAATT
Flanking Amino Acid:
IKKGLAFRNNSSLSWLKHPE
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
72.5
38.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.3
0.55
0.9
64.5
41.3
Minor 5ss
38.3
-1.3
3
48.9
47
Minor BPS
46.1
-0.2
2.5
72.41
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004095
137053885 - 137067939
14055