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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137059125_137059641_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137059125 - 137059641
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGACAA
U12 Branch Point Sequence:
AACTGTTGTATT
Flanking Amino Acid:
GTIYVIPKLFESKLKKLMSE
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
72.8
39.3
Major BPS
50.6
0.02
1.2
59
38
Major PPT
79.4
0.66
0.9
72.5
42.4
Minor 5ss
42
-0.9
3.1
57.3
46.8
Minor BPS
41.7
-0.5
2
55.6
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004095
137053885 - 137067939
14055