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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137059806_137060528_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137059806 - 137060528
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TATTTTAGAAAA
Flanking Amino Acid:
VVELGGGTLQVQYIDRGYIE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
70
0.5
1
67
39.8
Major PPT
73.6
0.53
0.9
69.4
35.8
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
48
-0.1
1.7
63.53
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004095
137053885 - 137067939
14055