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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137064034_137071037_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137064034 - 137071037
Intron Length:
7004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAGTAA
5'SS Class:
major
3'SS Sequence:
TCCCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TGTTGGTTATCT
Flanking Amino Acid:
KDGNILMDTKGKHEENPRKA
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1
63
32.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
84.7
0.78
0.7
79.1
26.6
Minor 5ss
36
-1.6
3.3
45.7
49.5
Minor BPS
47.8
-0
2.6
76.39
46

Associated Gene:

Gene:
CENPJ
Ensembl Gene ID:
ENSAPLG00000004962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005118
137063995 - 137086603
22609