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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137074112_137074863_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137074112 - 137074863
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
AGTCACATAACC
Flanking Amino Acid:
GVTLRRAESVSLPNRGLKSQ
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
85
0.79
0.7
76.7
32
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
52.2
0.05
1.8
65.96
38.3

Associated Gene:

Gene:
CENPJ
Ensembl Gene ID:
ENSAPLG00000004962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022078
137071032 - 137086603
15572
ENSAPLT00000005118
137063995 - 137086603
22609