Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137075107_137076117_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137075107 - 137076117

Intron Length:

1011

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAAAA

5'SS Class:

major

3'SS Sequence:

GCATTTTTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TATCATTTATAT

Flanking Amino Acid:

PDKKERDEIQALKQQIAELQ

Intron Amino Acid Position:

912

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

32.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

66.8

0.38

1.1

38.6

Minor 5ss

38.2

-1.3

2.9

48.3

47.4

Minor BPS

48.5

-0

1.8

69.25

Associated Gene:

Gene:

CENPJ

Ensembl Gene ID:

ENSAPLG00000004962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005118

137063995 - 137086603

22609

ENSAPLT00000022078

137071032 - 137086603

15572