Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137077286_137078478_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137077286 - 137078478

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGAAAT

5'SS Class:

major

3'SS Sequence:

TGTCCTTTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTGAT

U12 Branch Point Sequence:

TGTCCTTTGATA

Flanking Amino Acid:

QESGAERTATGNTVPSQILK

Intron Amino Acid Position:

812

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

73.4

37.3

Major BPS

0.5

59.3

39.1

Major PPT

71.5

0.48

68.6

37.3

Minor 5ss

33.9

-1.8

3.3

45.4

Minor BPS

67.3

0.54

1.2

72.37

Associated Gene:

Gene:

CENPJ

Ensembl Gene ID:

ENSAPLG00000004962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022078

137071032 - 137086603

15572

ENSAPLT00000005118

137063995 - 137086603

22609