About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13707969_13709196_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13707969 - 13709196
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
SGNPLDTVLKVLEILGKKFP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.2
0.52
0.7
68.4
25.4
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034335
13700549 - 13727290
26742
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055
ENSAPLT00000043623
13695672 - 13727290
31619