About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137080525_137081868_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
137080525 - 137081868
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
GAAATTACCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTTGAAAT
Flanking Amino Acid:
KQLWVTNTEERPIKAAIQEK
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
54.8
0.11
1
44.8
41.8
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
63.3
0.49
1.5
80.21
35.1

Associated Gene:

Gene:
CENPJ
Ensembl Gene ID:
ENSAPLG00000004962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022078
137071032 - 137086603
15572
ENSAPLT00000005118
137063995 - 137086603
22609