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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137096918_137097477_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137096918 - 137097477
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GGGTCTTTATTT
Flanking Amino Acid:
EVAKYNILEKINSMGSKDFV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.9
0.67
0.8
77.8
29.9
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
57.7
0.32
1.6
69.06
42.4

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300