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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137098488_137099754_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137098488 - 137099754
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTTGTACA
5'SS Class:
major
3'SS Sequence:
TGTTTTACTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTCCACTGAATT
Flanking Amino Acid:
GWLASTKLQKLLLEESISSS
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
71
40.7
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
83.6
0.76
0.8
77.7
35.4
Minor 5ss
28.1
-2.5
3.4
35.2
40.7
Minor BPS
57.8
0.32
1.7
75.59
40.9

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300
ENSAPLT00000034650
137088187 - 137136486
48300