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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137101963_137103907_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137101963 - 137103907
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
LLSRKQDLCQLIRDMLNIQE
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.7
80.9
30.8
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005273
137088187 - 137136486
48300
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021