About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137108402_137109142_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137108402 - 137109142
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
KTADISSDFEDDEFVVYKTA
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.8
0.8
0.8
77.4
36.9
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005273
137088187 - 137136486
48300
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021