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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13711673_13712034_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13711673 - 13712034
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
GCATCTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
GGCCTGGCAACT
Flanking Amino Acid:
FGYRGVSSQETAGIGASAHL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
79.7
0.67
0.9
76.6
37.2
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
35.7
-1
2.4
50.54
43.2

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055
ENSAPLT00000043623
13695672 - 13727290
31619
ENSAPLT00000034335
13700549 - 13727290
26742