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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137118282_137119753_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137118282 - 137119753
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTACTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATACTTTACTT
Flanking Amino Acid:
DLASLTEFITSATATLGNTD
Intron Amino Acid Position:
964

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
87.3
0.84
0.7
84.7
29.7
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
57.6
0.32
1.6
72.07
39.2

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300
ENSAPLT00000034650
137088187 - 137136486
48300