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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137122623_137123778_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137122623 - 137123778
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTATCTTTACA
Flanking Amino Acid:
PKSKHNWETKIQRQVSRIFS
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.2
37.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.3
0.61
0.9
72.8
36.2
Minor 5ss
46.4
-0.4
3.1
64.5
46.9
Minor BPS
61.9
0.37
1.7
71.53
40.4

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300