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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137126317_137127076_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137126317 - 137127076
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGATAA
5'SS Class:
major
3'SS Sequence:
CTTGCCAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTTGTTAATA
Flanking Amino Acid:
ILHENETEHEMKKQVLKNKI
Intron Amino Acid Position:
1171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
67.7
33.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.7
0.44
1
62.5
37.6
Minor 5ss
39.7
-1.2
2.8
47.7
47.8
Minor BPS
56.3
0.19
2.1
67.46
39.7

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300