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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13712795_13715611_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13712795 - 13715611
Intron Length:
2817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTACCTAACA
Flanking Amino Acid:
NEKGWNYILEKYDGHLPIEI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.9
0.56
0.9
69.4
35.9
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
63.9
0.43
1.9
78.55
37.1

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055
ENSAPLT00000043623
13695672 - 13727290
31619
ENSAPLT00000034335
13700549 - 13727290
26742