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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137132011_137133904_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137132011 - 137133904
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAC
5'SS Class:
major
3'SS Sequence:
GTTTATTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATCCATATCT
Flanking Amino Acid:
LNEVFELQNQNGSWNLSPQL
Intron Amino Acid Position:
1476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
63.5
37.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.6
0.55
0.8
69.4
36.6
Minor 5ss
35.3
-1.7
3.5
49.3
47.2
Minor BPS
65
0.55
1.9
86.27
39.2

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300
ENSAPLT00000034650
137088187 - 137136486
48300