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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137135047_137136335_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
137135047 - 137136335
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTATACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTATTATAATA
Flanking Amino Acid:
LMKLDNLTTSSGVHWTFELI
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78
0.63
0.9
73.4
35.2
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
58.8
0.27
1.6
72.33
33.5

Associated Gene:

Gene:
PARP4
Ensembl Gene ID:
ENSAPLG00000005053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034650
137088187 - 137136486
48300
ENSAPLT00000020325
137089356 - 137136486
47131
ENSAPLT00000005279
137088187 - 137137207
49021
ENSAPLT00000005273
137088187 - 137136486
48300