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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13715716_13716921_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13715716 - 13716921
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGGAACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTTCCTAATC
Flanking Amino Acid:
LQYILNKYLKGKVVTKEKIK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
34.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
63.3
0.3
1
54.8
39.3
Minor 5ss
38.5
-1.3
3.2
52
45.2
Minor BPS
66.3
0.49
1.6
75.98
33.9

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043623
13695672 - 13727290
31619
ENSAPLT00000034335
13700549 - 13727290
26742
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055