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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137158881_137159608_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137158881 - 137159608
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CTGCCACTAATT
Flanking Amino Acid:
NDKFQLPVFLDSHFIYSFSP
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
48.2
-0
2
67.37
43.3

Associated Gene:

Gene:
MPHOSPH8
Ensembl Gene ID:
ENSAPLG00000018803
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019231
137151516 - 137160395
8880