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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13717079_13727230_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13717079 - 13727230
Intron Length:
10152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TTTCTTAACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAACG
Flanking Amino Acid:
NILLATDSYKVTHYKQYPPN
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.9
0.54
0.9
71
33.5
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
87.3
1.03
1
86.99
30.4

Associated Gene:

Gene:
NAMPT
Ensembl Gene ID:
ENSAPLG00000006146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033900
13695672 - 13727290
31619
ENSAPLT00000006405
13691236 - 13727290
36055
ENSAPLT00000043623
13695672 - 13727290
31619
ENSAPLT00000034335
13700549 - 13727290
26742