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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137224441_137226847_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137224441 - 137226847
Intron Length:
2407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
AATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTATTGAACT
Flanking Amino Acid:
RCSDGAFLLTTTPRPVVVEP
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.6
0.73
0.9
73.8
40.7
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
61.5
0.44
1.6
77.95
37.6

Associated Gene:

Gene:
PSPC1
Ensembl Gene ID:
ENSAPLG00000006246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045894
137190616 - 137229738
39123
ENSAPLT00000006493
137168535 - 137229738
61204