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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137303508_137304323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137303508 - 137304323
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGATTG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
RCTICGKLTEIRHEVSFKNM
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
65.1
41.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
43.1
-0.8
2.9
56.2
48
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045795
137272387 - 137357995
85609
ENSAPLT00000006992
137272387 - 137357995
85609
ENSAPLT00000047039
137272387 - 137305759
33373