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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137304537_137305720_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137304537 - 137305720
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CGTAACTTAAGC
Flanking Amino Acid:
CQNCVGEYKQRNQKGQDRFP
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
50
-0
1.9
60.92
43.8

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047039
137272387 - 137305759
33373