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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137304537_137316170_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137304537 - 137316170
Intron Length:
11634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTAACTAATG
Flanking Amino Acid:
CQNCVGEYKQKYGKLTSCTG
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.8
0.74
0.8
81.4
35.9
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
49.2
-0.1
2.1
66.69
40.7

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006992
137272387 - 137357995
85609