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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137340959_137341927_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137340959 - 137341927
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
TQKGPENLQYDQSCQTPRTK
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
70.3
40.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79.1
0.65
0.8
77.4
36.6
Minor 5ss
34.7
-1.7
3.5
50.7
45.7
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045795
137272387 - 137357995
85609
ENSAPLT00000006992
137272387 - 137357995
85609