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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137343802_137343958_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137343802 - 137343958
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGTAC
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
PHMQTKSCQTEDDWKKEYVP
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
46.9
-0.2
1.3
43.7
38.9
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045795
137272387 - 137357995
85609
ENSAPLT00000006992
137272387 - 137357995
85609