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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137348569_137349497_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137348569 - 137349497
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
ELPELEELKSTKSVKLKEDL
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
ZMYM2
Ensembl Gene ID:
ENSAPLG00000006675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045795
137272387 - 137357995
85609
ENSAPLT00000006992
137272387 - 137357995
85609