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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137485327_137487370_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137485327 - 137487370
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTCCTAAATT
Flanking Amino Acid:
SGETEQKISQAMSEKIPVVP
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
69.3
0.68
1.6
81.92
40.2

Associated Gene:

Gene:
CRYL1
Ensembl Gene ID:
ENSAPLG00000002489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038763
137484353 - 137543757
59405
ENSAPLT00000002519
137484353 - 137543757
59405