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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137487478_137499960_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137487478 - 137499960
Intron Length:
12483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTTTTCACT
Flanking Amino Acid:
PLETMHLNAEGISNYCERYR
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.4
0.73
0.7
81.1
29.7
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
60
0.4
1.7
75.92
41.3

Associated Gene:

Gene:
CRYL1
Ensembl Gene ID:
ENSAPLG00000002489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038763
137484353 - 137543757
59405
ENSAPLT00000002519
137484353 - 137543757
59405