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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_137516725_137531229_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137516725 - 137531229
Intron Length:
14505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
AAVEGATFIQECTPENLELK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84.2
0.77
0.8
81.7
34.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
CRYL1
Ensembl Gene ID:
ENSAPLG00000002489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002519
137484353 - 137543757
59405